1. Introduction | 2. Installation and Loading | 3. Data Preparation | 4. Basic Usage | 4.1 Using Only Sequence Data | Adjusting Sequence Parameters | 4.2 Adding Sequence Alignment Data | Customizing Ribbon Colors | Impact of Sequence Layout on Ribbons | 4.3 Adding Gene Annotation Information | Customizing Gene Arrow Styles | 5. Comprehensive Example | 6. Notes
Package: ggchord 0.2.0
ggchord: Multi-Sequence 'BLAST' Alignment Chord Diagram Visualization Tool
A function built on 'ggplot2' that visualizes pairwise 'BLAST' alignment results as chord diagrams, intuitively displaying homologous regions between query and subject sequences.
Authors:
ggchord_0.2.0.tar.gz
ggchord_0.2.0.zip(r-4.7-any)ggchord_0.2.0.zip(r-4.6-any)ggchord_0.2.0.zip(r-4.5-any)
ggchord_0.2.0.tgz(r-4.6-any)ggchord_0.2.0.tgz(r-4.5-any)
ggchord_0.2.0.tar.gz(r-4.7-any)ggchord_0.2.0.tar.gz(r-4.6-any)
ggchord_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ggchord/json (API)
| # Install 'ggchord' in R: |
| install.packages('ggchord', repos = c('https://dangjem.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/dangjem/ggchord/issues
Datasets:
- gene_data_example - Example gene annotation data
- ribbon_data_example - Example alignment data
- seq_data_example - Example sequence data
chord-diagramgenomics-visualizationggplot2
Last updated from:b24114f2cf. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 147 | ||
| source / vignettes | OK | 224 | ||
| linux-release-x86_64 | OK | 152 | ||
| macos-release-arm64 | OK | 119 | ||
| macos-oldrel-arm64 | OK | 136 | ||
| windows-devel | OK | 111 | ||
| windows-release | OK | 103 | ||
| windows-oldrel | OK | 85 | ||
| wasm-release | OK | 112 |
Exports:ggchord
Dependencies:clicpp11farverggnewscaleggplot2gluegtableisobandlabelinglifecycleR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Example gene annotation data | gene_data_example |
| ggchord: A ggplot2-based tool for multi-sequence alignment chord plots | ggchord |
| Example alignment data | ribbon_data_example |
| Example sequence data | seq_data_example |
